Upon entering a url that was of the similar:
http://www.blah.com/~/
It would not parse after the ~ and you would only get the main address. So if your link was http://www.blah.com/~user/index.html you would only get http://www.blah.com .
The easy fix to this is open up the file in src/client called pfcclient.js and go to line 1120 and find the following:
var rx_url = new RegExp('(^|[^\"])([a-z]+://[a-z0-9.\/\?\=\&\-_\#:;%]*)([^\"]|$)','ig');
and modify it to have
var rx_url = new RegExp('(^|[^\"])([a-z]+://[a-z0-9.\~\/\?\=\&\-_\#:;%]*)([^\"]|$)','ig');
And your URL Parsing will work perfect.